IL_8YLD_057

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YLD_057 not in the Motif Atlas

Homologous match to IL_8C3A_451

Geometric discrepancy: 0.3468

The information below is about IL_8C3A_451

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_92540.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

32

Unit IDs

8YLD|1|2|G|1178
8YLD|1|2|G|1179
*
8YLD|1|2|C|1459
8YLD|1|2|A|1460
8YLD|1|2|C|1461

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SE

Small ribosomal subunit protein uS19

Chain SH

Small ribosomal subunit protein uS13A

Chain s

Transfer RNA; tRNA

Chain t

Transfer RNA; tRNA