3D structure

PDB id
8YLD (explore in PDB, NAKB, or RNA 3D Hub)
Description
State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GUG*CC
Length
5 nucleotides
Bulged bases
8YLD|1|2|U|1269
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8YLD_063 not in the Motif Atlas
Homologous match to IL_8C3A_455
Geometric discrepancy: 0.1853
The information below is about IL_8C3A_455
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_89505.2
Basepair signature
cWW-L-cWW
Number of instances in this motif group
94

Unit IDs

8YLD|1|2|G|1268
8YLD|1|2|U|1269
8YLD|1|2|G|1270
*
8YLD|1|2|C|1440
8YLD|1|2|C|1441

Current chains

Chain 2
18S rRNA

Nearby chains

Chain SC
Small ribosomal subunit protein eS10A
Chain SM
Small ribosomal subunit protein uS14A
Chain SN
Small ribosomal subunit protein eS31
Chain x
Elongation factor 2

Coloring options:


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