IL_8YLD_070
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AAUA*UUCU
- Length
- 8 nucleotides
- Bulged bases
- 8YLD|1|2|A|1346, 8YLD|1|2|U|1347
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLD_070 not in the Motif Atlas
- Homologous match to IL_8C3A_462
- Geometric discrepancy: 0.2722
- The information below is about IL_8C3A_462
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_25234.1
- Basepair signature
- cWW-cSH-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8YLD|1|2|A|1345
8YLD|1|2|A|1346
8YLD|1|2|U|1347
8YLD|1|2|A|1348
*
8YLD|1|2|U|1377
8YLD|1|2|U|1378
8YLD|1|2|C|1379
8YLD|1|2|U|1380
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SA
- Small ribosomal subunit protein uS3
- Chain SF
- Small ribosomal subunit protein uS9A
- Chain SJ
- Small ribosomal subunit protein uS10
- Chain SO
- Small ribosomal subunit protein RACK1
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