IL_8YLD_071
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUG*UUAUC
- Length
- 8 nucleotides
- Bulged bases
- 8YLD|1|2|U|1370, 8YLD|1|2|A|1371
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLD_071 not in the Motif Atlas
- Homologous match to IL_8C3A_464
- Geometric discrepancy: 0.4347
- The information below is about IL_8C3A_464
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_86319.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 269
Unit IDs
8YLD|1|2|G|1352
8YLD|1|2|U|1353
8YLD|1|2|G|1354
*
8YLD|1|2|U|1369
8YLD|1|2|U|1370
8YLD|1|2|A|1371
8YLD|1|2|U|1372
8YLD|1|2|C|1373
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SF
- Small ribosomal subunit protein uS9A
- Chain SI
- Small ribosomal subunit protein eS19A
Coloring options: