3D structure

PDB id
8YLD (explore in PDB, NAKB, or RNA 3D Hub)
Description
State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GUG*UUAUC
Length
8 nucleotides
Bulged bases
8YLD|1|2|U|1370, 8YLD|1|2|A|1371
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8YLD_071 not in the Motif Atlas
Homologous match to IL_8C3A_464
Geometric discrepancy: 0.4347
The information below is about IL_8C3A_464
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_86319.3
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
269

Unit IDs

8YLD|1|2|G|1352
8YLD|1|2|U|1353
8YLD|1|2|G|1354
*
8YLD|1|2|U|1369
8YLD|1|2|U|1370
8YLD|1|2|A|1371
8YLD|1|2|U|1372
8YLD|1|2|C|1373

Current chains

Chain 2
18S rRNA

Nearby chains

Chain SF
Small ribosomal subunit protein uS9A
Chain SI
Small ribosomal subunit protein eS19A

Coloring options:


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