IL_8YLD_076

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YLD_076 not in the Motif Atlas

Homologous match to IL_8C3A_507

Geometric discrepancy: 0.175

The information below is about IL_8C3A_507

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.1

Basepair signature

cWW-tSH-L-R-L-R-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8YLD|1|2|G|1540
8YLD|1|2|G|1541
8YLD|1|2|G|1542
8YLD|1|2|A|1543
8YLD|1|2|U|1544
8YLD|1|2|A|1545
*
8YLD|1|2|U|1566
8YLD|1|2|U|1567
8YLD|1|2|C|1568
8YLD|1|2|A|1569
8YLD|1|2|A|1570
8YLD|1|2|C|1571

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SH

Small ribosomal subunit protein uS13A

Chain SI

Small ribosomal subunit protein eS19A