IL_8YLD_080
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLD_080 not in the Motif Atlas
- Homologous match to IL_8CRE_469
- Geometric discrepancy: 0.3673
- The information below is about IL_8CRE_469
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_11399.2
- Basepair signature
- cWW-cHW-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
8YLD|1|2|C|1644
8YLD|1|2|G|1645
8YLD|1|2|C|1646
8YLD|1|2|U|1647
*
8YLD|1|2|A|1753
8YLD|1|2|A|1754
8YLD|1|2|A|1755
8YLD|1|2|A|1756
8YLD|1|2|G|1757
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain Sc
- Small ribosomal subunit protein uS12A
- Chain p
- Large ribosomal subunit protein eL41A
- Chain s
- Transfer RNA; tRNA
Coloring options: