IL_8YLD_086
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUCA*UUUG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLD_086 not in the Motif Atlas
- Homologous match to IL_8C3A_479
- Geometric discrepancy: 0.1917
- The information below is about IL_8C3A_479
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_54697.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 51
Unit IDs
8YLD|1|2|C|1675
8YLD|1|2|U|1676
8YLD|1|2|C|1677
8YLD|1|2|A|1678
*
8YLD|1|2|U|1723
8YLD|1|2|U|1724
8YLD|1|2|U|1725
8YLD|1|2|G|1726
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain ST
- Small ribosomal subunit protein eS6A
- Chain SV
- Small ribosomal subunit protein eS8A
- Chain Y
- Large ribosomal subunit protein eL24A
Coloring options: