IL_8YLD_114
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 8YLD|1|A|A|933, 8YLD|1|A|G|937
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLD_114 not in the Motif Atlas
- Homologous match to IL_8C3A_030
- Geometric discrepancy: 0.1157
- The information below is about IL_8C3A_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
8YLD|1|A|G|805
8YLD|1|A|A|806
8YLD|1|A|A|807
8YLD|1|A|A|808
8YLD|1|A|G|809
*
8YLD|1|A|C|931
8YLD|1|A|U|932
8YLD|1|A|A|933
8YLD|1|A|G|934
8YLD|1|A|U|935
8YLD|1|A|A|936
8YLD|1|A|G|937
8YLD|1|A|C|938
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain F
- Large ribosomal subunit protein uL4A
- Chain N
- Large ribosomal subunit protein eL13A
- Chain P
- Large ribosomal subunit protein eL15A
- Chain c
- Large ribosomal subunit protein uL15
- Chain l
- Large ribosomal subunit protein eL37A
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