IL_8YLD_126
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GAUUA*UUCUC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLD_126 not in the Motif Atlas
- Homologous match to IL_8C3A_044
- Geometric discrepancy: 0.1872
- The information below is about IL_8C3A_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_05145.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
8YLD|1|A|G|1005
8YLD|1|A|A|1006
8YLD|1|A|U|1007
8YLD|1|A|U|1008
8YLD|1|A|A|1009
*
8YLD|1|A|U|1041
8YLD|1|A|U|1042
8YLD|1|A|C|1043
8YLD|1|A|U|1044
8YLD|1|A|C|1045
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain G
- Large ribosomal subunit protein uL18
- Chain L
- Large ribosomal subunit protein uL16
- Chain s
- Transfer RNA; tRNA
Coloring options: