IL_8YLD_133
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UGCCGGAAUA*UUA
- Length
- 13 nucleotides
- Bulged bases
- 8YLD|1|A|U|1181
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLD_133 not in the Motif Atlas
- Geometric match to IL_8C3A_427
- Geometric discrepancy: 0.1827
- The information below is about IL_8C3A_427
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_10289.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 237
Unit IDs
8YLD|1|A|U|1173
8YLD|1|A|G|1174
8YLD|1|A|C|1175
8YLD|1|A|C|1176
8YLD|1|A|G|1177
8YLD|1|A|G|1178
8YLD|1|A|A|1179
8YLD|1|A|A|1180
8YLD|1|A|U|1181
8YLD|1|A|A|1182
*
8YLD|1|A|U|1324
8YLD|1|A|U|1325
8YLD|1|A|A|1326
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain I
- Large ribosomal subunit protein uL30A
- Chain O
- Large ribosomal subunit protein eL14A
- Chain Q
- Large ribosomal subunit protein uL13A
- Chain U
- Large ribosomal subunit protein eL20A
- Chain h
- Large ribosomal subunit protein eL33A
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