IL_8YLD_136
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUG*CC
- Length
- 5 nucleotides
- Bulged bases
- 8YLD|1|A|U|1208
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLD_136 not in the Motif Atlas
- Homologous match to IL_8P9A_281
- Geometric discrepancy: 0.2813
- The information below is about IL_8P9A_281
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_89505.4
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 117
Unit IDs
8YLD|1|A|G|1207
8YLD|1|A|U|1208
8YLD|1|A|G|1209
*
8YLD|1|A|C|1296
8YLD|1|A|C|1297
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain K
- Large ribosomal subunit protein uL6A
- Chain U
- Large ribosomal subunit protein eL20A
- Chain o
- Large ribosomal subunit protein eL40A
Coloring options: