IL_8YLD_141
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UGACGAAG*UCGAA
- Length
- 13 nucleotides
- Bulged bases
- 8YLD|1|A|C|1391
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLD_141 not in the Motif Atlas
- Homologous match to IL_8C3A_063
- Geometric discrepancy: 0.1598
- The information below is about IL_8C3A_063
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.5
- Basepair signature
- cWW-cWW-tSS-tSH-tHS-cWW-tHS
- Number of instances in this motif group
- 32
Unit IDs
8YLD|1|A|U|1388
8YLD|1|A|G|1389
8YLD|1|A|A|1390
8YLD|1|A|C|1391
8YLD|1|A|G|1392
8YLD|1|A|A|1393
8YLD|1|A|A|1394
8YLD|1|A|G|1395
*
8YLD|1|A|U|1415
8YLD|1|A|C|1416
8YLD|1|A|G|1417
8YLD|1|A|A|1418
8YLD|1|A|A|1419
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain F
- Large ribosomal subunit protein uL4A
- Chain H
- Large ribosomal subunit protein eL6B
- Chain R
- Large ribosomal subunit protein uL22A
- Chain a
- Large ribosomal subunit protein uL24A
- Chain g
- Large ribosomal subunit protein eL32
Coloring options: