IL_8YLD_158
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AGUCGG*CUGU
- Length
- 10 nucleotides
- Bulged bases
- 8YLD|1|A|G|2335
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLD_158 not in the Motif Atlas
- Homologous match to IL_8C3A_083
- Geometric discrepancy: 0.2254
- The information below is about IL_8C3A_083
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_06455.1
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 7
Unit IDs
8YLD|1|A|A|1901
8YLD|1|A|G|1902
8YLD|1|A|U|1903
8YLD|1|A|C|1904
8YLD|1|A|G|1905
8YLD|1|A|G|1906
*
8YLD|1|A|C|2333
8YLD|1|A|U|2334
8YLD|1|A|G|2335
8YLD|1|A|U|2336
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain E
- Large ribosomal subunit protein uL3
- Chain X
- Large ribosomal subunit protein uL14A
Coloring options: