IL_8YLD_168

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YLD_168 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.1426

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8YLD|1|A|U|2211
8YLD|1|A|C|2212
8YLD|1|A|A|2213
8YLD|1|A|A|2214
8YLD|1|A|A|2215
8YLD|1|A|G|2216
8YLD|1|A|U|2217
*
8YLD|1|A|A|2228
8YLD|1|A|A|2229
8YLD|1|A|C|2230
8YLD|1|A|C|2231
8YLD|1|A|A|2232
8YLD|1|A|A|2233
8YLD|1|A|G|2234

Current chains

Chain A

25S rRNA

Nearby chains

Chain k

Large ribosomal subunit protein eL36A

Chain t

Transfer RNA; tRNA