IL_8YLD_170

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

8YLD|1|A|A|2281, 8YLD|1|A|C|2287, 8YLD|1|A|C|2306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YLD_170 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.1484

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8YLD|1|A|C|2277
8YLD|1|A|C|2278
8YLD|1|A|A|2279
8YLD|1|A|A|2280
8YLD|1|A|A|2281
8YLD|1|A|U|2282
8YLD|1|A|G|2283
8YLD|1|A|C|2284
8YLD|1|A|C|2285
8YLD|1|A|U|2286
8YLD|1|A|C|2287
8YLD|1|A|G|2288
*
8YLD|1|A|C|2304
8YLD|1|A|G|2305
8YLD|1|A|C|2306
8YLD|1|A|G|2307

Current chains

Chain A

25S rRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain p

Large ribosomal subunit protein eL41A

Chain s

Transfer RNA; tRNA