IL_8YLD_197
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAAU*AGAACG
- Length
- 10 nucleotides
- Bulged bases
- 8YLD|1|A|A|3142, 8YLD|1|A|C|3143
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLD_197 not in the Motif Atlas
- Homologous match to IL_8P9A_342
- Geometric discrepancy: 0.1692
- The information below is about IL_8P9A_342
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.15
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 34
Unit IDs
8YLD|1|A|C|3004
8YLD|1|A|A|3005
8YLD|1|A|A|3006
8YLD|1|A|U|3007
*
8YLD|1|A|A|3139
8YLD|1|A|G|3140
8YLD|1|A|A|3141
8YLD|1|A|A|3142
8YLD|1|A|C|3143
8YLD|1|A|G|3144
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain E
- Large ribosomal subunit protein uL3
- Chain Q
- Large ribosomal subunit protein uL13A
Coloring options: