IL_8YLD_202

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUG*CAUUG

Length

8 nucleotides

Bulged bases

8YLD|1|A|U|3078, 8YLD|1|A|U|3079

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YLD_202 not in the Motif Atlas

Geometric match to IL_4M4O_001

Geometric discrepancy: 0.2482

The information below is about IL_4M4O_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

8YLD|1|A|C|3063
8YLD|1|A|U|3064
8YLD|1|A|G|3065
*
8YLD|1|A|C|3076
8YLD|1|A|A|3077
8YLD|1|A|U|3078
8YLD|1|A|U|3079
8YLD|1|A|G|3080

Current chains

Chain A

25S rRNA

Nearby chains

Chain T

Large ribosomal subunit protein eL19A

Chain f

Large ribosomal subunit protein eL31A