IL_8YLD_215
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UGUAAG*CUGAG
- Length
- 11 nucleotides
- Bulged bases
- 8YLD|1|A|G|3369
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLD_215 not in the Motif Atlas
- Homologous match to IL_8C3A_139
- Geometric discrepancy: 0.1413
- The information below is about IL_8C3A_139
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_83162.8
- Basepair signature
- cWW-cWW-tSH-cWW-tHH-L
- Number of instances in this motif group
- 4
Unit IDs
8YLD|1|A|U|3332
8YLD|1|A|G|3333
8YLD|1|A|U|3334
8YLD|1|A|A|3335
8YLD|1|A|A|3336
8YLD|1|A|G|3337
*
8YLD|1|A|C|3367
8YLD|1|A|U|3368
8YLD|1|A|G|3369
8YLD|1|A|A|3370
8YLD|1|A|G|3371
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain E
- Large ribosomal subunit protein uL3
- Chain Y
- Large ribosomal subunit protein eL24A
- Chain f
- Large ribosomal subunit protein eL31A
Coloring options: