IL_8YLD_217
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AGAG*CGAU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLD_217 not in the Motif Atlas
- Homologous match to IL_8C3A_141
- Geometric discrepancy: 0.3661
- The information below is about IL_8C3A_141
- Detailed Annotation
- Double sheared; A in syn
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.12
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 35
Unit IDs
8YLD|1|A|A|3342
8YLD|1|A|G|3343
8YLD|1|A|A|3344
8YLD|1|A|G|3345
*
8YLD|1|A|C|3360
8YLD|1|A|G|3361
8YLD|1|A|A|3362
8YLD|1|A|U|3363
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain SV
- Small ribosomal subunit protein eS8A
- Chain T
- Large ribosomal subunit protein eL19A
- Chain Y
- Large ribosomal subunit protein eL24A
Coloring options: