IL_8YLD_220

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CG*CUG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YLD_220 not in the Motif Atlas

Homologous match to IL_8C3A_146

Geometric discrepancy: 0.2327

The information below is about IL_8C3A_146

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_06586.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

36

Unit IDs

8YLD|1|B|C|29
8YLD|1|B|G|30
*
8YLD|1|B|C|47
8YLD|1|B|U|48
8YLD|1|B|G|49

Current chains

Chain B

5S rRNA

Nearby chains

Chain G

Large ribosomal subunit protein uL18

Chain M

Large ribosomal subunit protein uL5B