IL_8YLR_034

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

8YLR|1|2|A|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YLR_034 not in the Motif Atlas

Homologous match to IL_8C3A_426

Geometric discrepancy: 0.1638

The information below is about IL_8C3A_426

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.4

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

8YLR|1|2|G|616
8YLR|1|2|U|617
8YLR|1|2|U|618
8YLR|1|2|A|619
8YLR|1|2|A|620
8YLR|1|2|A|621
8YLR|1|2|A|622
*
8YLR|1|2|U|1104
8YLR|1|2|C|1105

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SR

Small ribosomal subunit protein uS5

Chain Sc

Small ribosomal subunit protein uS12A

Chain Se

Small ribosomal subunit protein eS26A