IL_8YLR_040

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAAAAAUUA*UAUAUUAGC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YLR|1|2|G|751
8YLR|1|2|A|752
8YLR|1|2|A|753
8YLR|1|2|A|754
8YLR|1|2|A|755
8YLR|1|2|A|756
8YLR|1|2|A|757
8YLR|1|2|U|758
8YLR|1|2|U|759
8YLR|1|2|A|760
*
8YLR|1|2|U|790
8YLR|1|2|A|791
8YLR|1|2|U|792
8YLR|1|2|A|793
8YLR|1|2|U|794
8YLR|1|2|U|795
8YLR|1|2|A|796
8YLR|1|2|G|797
8YLR|1|2|C|798

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SS

Small ribosomal subunit protein eS4A

Chain SW

Small ribosomal subunit protein uS4A

Chain SX

Small ribosomal subunit protein uS17A

Chain Sb

Small ribosomal subunit protein uS8A