IL_8YLR_042

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGG*CCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YLR_042 not in the Motif Atlas

Geometric match to IL_4KQ0_003

Geometric discrepancy: 0.2268

The information below is about IL_4KQ0_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

8YLR|1|2|U|822
8YLR|1|2|G|823
8YLR|1|2|G|824
*
8YLR|1|2|C|848
8YLR|1|2|C|849
8YLR|1|2|A|850

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SX

Small ribosomal subunit protein uS17A

Chain T

Large ribosomal subunit protein eL19A