IL_8YLR_044

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GA*UUU

Length

5 nucleotides

Bulged bases

8YLR|1|2|U|959

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YLR_044 not in the Motif Atlas

Geometric match to IL_3D2V_001

Geometric discrepancy: 0.3901

The information below is about IL_3D2V_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

8YLR|1|2|G|868
8YLR|1|2|A|869
*
8YLR|1|2|U|958
8YLR|1|2|U|959
8YLR|1|2|U|960

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SY

Small ribosomal subunit protein uS15

Chain Sf

Small ribosomal subunit protein eS27A