IL_8YLR_045

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGU*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YLR_045 not in the Motif Atlas

Geometric match to IL_5TBW_042

Geometric discrepancy: 0.1848

The information below is about IL_5TBW_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8YLR|1|2|G|871
8YLR|1|2|G|872
8YLR|1|2|U|873
*
8YLR|1|2|G|954
8YLR|1|2|A|955
8YLR|1|2|C|956

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SQ

Small ribosomal subunit protein eS1A

Chain SY

Small ribosomal subunit protein uS15

Chain Sf

Small ribosomal subunit protein eS27A