IL_8YLR_053

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8YLR|1|2|U|1052

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YLR_053 not in the Motif Atlas

Homologous match to IL_9PN5_193

Geometric discrepancy: 0.3873

The information below is about IL_9PN5_193

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.9

Basepair signature

cWW-L-cWW

Number of instances in this motif group

193

Unit IDs

8YLR|1|2|G|1051
8YLR|1|2|U|1052
8YLR|1|2|G|1053
*
8YLR|1|2|C|1066
8YLR|1|2|C|1067

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SP

Small ribosomal subunit protein uS2A

Chain SQ

Small ribosomal subunit protein eS1A