IL_8YLR_054

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAGUAUGG*CUGAAAC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YLR|1|2|G|1111
8YLR|1|2|G|1112
8YLR|1|2|A|1113
8YLR|1|2|G|1114
8YLR|1|2|U|1115
8YLR|1|2|A|1116
8YLR|1|2|U|1117
8YLR|1|2|G|1118
8YLR|1|2|G|1119
*
8YLR|1|2|C|1128
8YLR|1|2|U|1129
8YLR|1|2|G|1130
8YLR|1|2|A|1131
8YLR|1|2|A|1132
8YLR|1|2|A|1133
8YLR|1|2|C|1134

Current chains

Chain 2

18S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain Sc

Small ribosomal subunit protein uS12A

Chain p

Large ribosomal subunit protein eL41A