IL_8YLR_055

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GACGGAAG*CUUUGUAC

Length

16 nucleotides

Bulged bases

8YLR|1|2|G|1150, 8YLR|1|2|A|1631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YLR|1|2|G|1146
8YLR|1|2|A|1147
8YLR|1|2|C|1148
8YLR|1|2|G|1149
8YLR|1|2|G|1150
8YLR|1|2|A|1151
8YLR|1|2|A|1152
8YLR|1|2|G|1153
*
8YLR|1|2|C|1625
8YLR|1|2|U|1626
8YLR|1|2|U|1627
8YLR|1|2|U|1628
8YLR|1|2|G|1629
8YLR|1|2|U|1630
8YLR|1|2|A|1631
8YLR|1|2|C|1632

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SR

Small ribosomal subunit protein uS5

Chain Se

Small ribosomal subunit protein eS26A

Chain p

Large ribosomal subunit protein eL41A