IL_8YLR_073
3D structure
- PDB id
- 8YLR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GCCAGCGA*UUGUGAAAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLR_073 not in the Motif Atlas
- Homologous match to IL_8C3A_466
- Geometric discrepancy: 0.1692
- The information below is about IL_8C3A_466
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_48143.1
- Basepair signature
- cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8YLR|1|2|G|1480
8YLR|1|2|C|1481
8YLR|1|2|C|1482
8YLR|1|2|A|1483
8YLR|1|2|G|1484
8YLR|1|2|C|1485
8YLR|1|2|G|1486
8YLR|1|2|A|1487
*
8YLR|1|2|U|1519
8YLR|1|2|U|1520
8YLR|1|2|G|1521
8YLR|1|2|U|1522
8YLR|1|2|G|1523
8YLR|1|2|A|1524
8YLR|1|2|A|1525
8YLR|1|2|A|1526
8YLR|1|2|C|1527
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SA
- Small ribosomal subunit protein uS3
- Chain SB
- Small ribosomal subunit protein uS7
- Chain SF
- Small ribosomal subunit protein uS9A
- Chain SI
- Small ribosomal subunit protein eS19A
- Chain SJ
- Small ribosomal subunit protein uS10
- Chain SM
- Small ribosomal subunit protein uS14A
Coloring options: