IL_8YLR_096
3D structure
- PDB id
- 8YLR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUG*CCG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLR_096 not in the Motif Atlas
- Homologous match to IL_8P9A_237
- Geometric discrepancy: 0.113
- The information below is about IL_8P9A_237
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 174
Unit IDs
8YLR|1|A|C|125
8YLR|1|A|U|126
8YLR|1|A|G|127
*
8YLR|1|A|C|141
8YLR|1|A|C|142
8YLR|1|A|G|143
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain J
- Large ribosomal subunit protein eL8A
- Chain P
- Large ribosomal subunit protein eL15A
- Chain Z
- Large ribosomal subunit protein uL23
- Chain j
- Large ribosomal subunit protein uL29A
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