IL_8YLR_103
3D structure
- PDB id
- 8YLR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UUU*AUA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLR_103 not in the Motif Atlas
- Homologous match to IL_8P9A_245
- Geometric discrepancy: 0.1164
- The information below is about IL_8P9A_245
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_71625.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 65
Unit IDs
8YLR|1|A|U|429
8YLR|1|A|U|430
8YLR|1|A|U|431
*
8YLR|1|A|A|628
8YLR|1|A|U|629
8YLR|1|A|A|630
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain Q
- Large ribosomal subunit protein uL13A
- Chain g
- Large ribosomal subunit protein eL32
- Chain h
- Large ribosomal subunit protein eL33A
Coloring options: