IL_8YLR_112

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YLR_112 not in the Motif Atlas

Homologous match to IL_8C3A_028

Geometric discrepancy: 0.1728

The information below is about IL_8C3A_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8YLR|1|A|C|758
8YLR|1|A|U|759
8YLR|1|A|G|760
8YLR|1|A|A|761
8YLR|1|A|U|762
8YLR|1|A|G|763
*
8YLR|1|A|C|768
8YLR|1|A|G|769
8YLR|1|A|G|770
8YLR|1|A|A|771
8YLR|1|A|U|772
8YLR|1|A|G|773

Current chains

Chain A

25S rRNA

Nearby chains

Chain N

Large ribosomal subunit protein eL13A

Chain c

Large ribosomal subunit protein uL15

Chain q

Large ribosomal subunit protein eL42A