IL_8YLR_125
3D structure
- PDB id
- 8YLR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GAGGUAA*UAAAUAU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLR_125 not in the Motif Atlas
- Homologous match to IL_8P9A_266
- Geometric discrepancy: 0.1111
- The information below is about IL_8P9A_266
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_29198.2
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
8YLR|1|A|G|991
8YLR|1|A|A|992
8YLR|1|A|G|993
8YLR|1|A|G|994
8YLR|1|A|U|995
8YLR|1|A|A|996
8YLR|1|A|A|997
*
8YLR|1|A|U|1052
8YLR|1|A|A|1053
8YLR|1|A|A|1054
8YLR|1|A|A|1055
8YLR|1|A|U|1056
8YLR|1|A|A|1057
8YLR|1|A|U|1058
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain G
- Large ribosomal subunit protein uL18
- Chain I
- Large ribosomal subunit protein uL30A
- Chain L
- Large ribosomal subunit protein uL16
- Chain V
- Large ribosomal subunit protein eL21A
- Chain d
- Large ribosomal subunit protein eL29
Coloring options: