IL_8YLR_130

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUCCGGG*CUUGA

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YLR|1|A|U|1014
8YLR|1|A|U|1015
8YLR|1|A|C|1016
8YLR|1|A|C|1017
8YLR|1|A|G|1018
8YLR|1|A|G|1019
8YLR|1|A|G|1020
*
8YLR|1|A|C|1032
8YLR|1|A|U|1033
8YLR|1|A|U|1034
8YLR|1|A|G|1035
8YLR|1|A|A|1036

Current chains

Chain A

25S rRNA

Nearby chains

Chain L

Large ribosomal subunit protein uL16

Chain M

Large ribosomal subunit protein uL5B