IL_8YLR_142

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

8YLR|1|A|A|1263

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YLR_142 not in the Motif Atlas

Homologous match to IL_8P9A_284

Geometric discrepancy: 0.1701

The information below is about IL_8P9A_284

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

23

Unit IDs

8YLR|1|A|G|1262
8YLR|1|A|A|1263
8YLR|1|A|G|1264
8YLR|1|A|U|1265
8YLR|1|A|G|1266
*
8YLR|1|A|C|1275
8YLR|1|A|U|1276
8YLR|1|A|C|1277

Current chains

Chain A

25S rRNA

Nearby chains

Chain o

Large ribosomal subunit protein eL40A