IL_8YLR_162
3D structure
- PDB id
- 8YLR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGAAGUCGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- 8YLR|1|A|G|2335
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLR_162 not in the Motif Atlas
- Geometric match to IL_8C3A_484
- Geometric discrepancy: 0.182
- The information below is about IL_8C3A_484
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.2
- Basepair signature
- cWW-cWW-L-cWW-L-R-L-R-L-L
- Number of instances in this motif group
- 3
Unit IDs
8YLR|1|A|G|1898
8YLR|1|A|G|1899
8YLR|1|A|A|1900
8YLR|1|A|A|1901
8YLR|1|A|G|1902
8YLR|1|A|U|1903
8YLR|1|A|C|1904
8YLR|1|A|G|1905
8YLR|1|A|G|1906
*
8YLR|1|A|C|2333
8YLR|1|A|U|2334
8YLR|1|A|G|2335
8YLR|1|A|U|2336
8YLR|1|A|C|2337
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain E
- Large ribosomal subunit protein uL3
- Chain X
- Large ribosomal subunit protein uL14A
Coloring options: