IL_8YLR_171
3D structure
- PDB id
- 8YLR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUG*CG
- Length
- 5 nucleotides
- Bulged bases
- 8YLR|1|A|U|2205
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLR_171 not in the Motif Atlas
- Homologous match to IL_8P9A_314
- Geometric discrepancy: 0.3262
- The information below is about IL_8P9A_314
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_97561.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 129
Unit IDs
8YLR|1|A|C|2204
8YLR|1|A|U|2205
8YLR|1|A|G|2206
*
8YLR|1|A|C|2237
8YLR|1|A|G|2238
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain D
- Large ribosomal subunit protein uL2A
- Chain SQ
- Small ribosomal subunit protein eS1A
- Chain u
- Transfer RNA; tRNA
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