IL_8YLR_182

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGGUGUAGAAUAAG*CUACC

Length

19 nucleotides

Bulged bases

8YLR|1|A|U|2453, 8YLR|1|A|U|2460, 8YLR|1|A|U|2493

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YLR|1|A|G|2450
8YLR|1|A|G|2451
8YLR|1|A|G|2452
8YLR|1|A|U|2453
8YLR|1|A|G|2454
8YLR|1|A|U|2455
8YLR|1|A|A|2456
8YLR|1|A|G|2457
8YLR|1|A|A|2458
8YLR|1|A|A|2459
8YLR|1|A|U|2460
8YLR|1|A|A|2461
8YLR|1|A|A|2462
8YLR|1|A|G|2463
*
8YLR|1|A|C|2492
8YLR|1|A|U|2493
8YLR|1|A|A|2494
8YLR|1|A|C|2495
8YLR|1|A|C|2496

Current chains

Chain A

25S rRNA

Nearby chains

Chain u

Transfer RNA; tRNA