IL_8YLR_183

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAG*CGCCAGUGAAAUAC

Length

18 nucleotides

Bulged bases

8YLR|1|A|U|2482

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YLR|1|A|G|2466
8YLR|1|A|G|2467
8YLR|1|A|A|2468
8YLR|1|A|G|2469
*
8YLR|1|A|C|2476
8YLR|1|A|G|2477
8YLR|1|A|C|2478
8YLR|1|A|C|2479
8YLR|1|A|A|2480
8YLR|1|A|G|2481
8YLR|1|A|U|2482
8YLR|1|A|G|2483
8YLR|1|A|A|2484
8YLR|1|A|A|2485
8YLR|1|A|A|2486
8YLR|1|A|U|2487
8YLR|1|A|A|2488
8YLR|1|A|C|2489

Current chains

Chain A

25S rRNA

Nearby chains

Chain u

Transfer RNA; tRNA

Chain v

Elongation factor 3A