IL_8YLR_211

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

8YLR|1|A|U|3198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YLR_211 not in the Motif Atlas

Geometric match to IL_5TBW_125

Geometric discrepancy: 0.2224

The information below is about IL_5TBW_125

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8YLR|1|A|C|3193
8YLR|1|A|C|3194
*
8YLR|1|A|G|3197
8YLR|1|A|U|3198
8YLR|1|A|G|3199

Current chains

Chain A

25S rRNA

Nearby chains

Chain K

Large ribosomal subunit protein uL6A

Chain O

Large ribosomal subunit protein eL14A

Chain Q

Large ribosomal subunit protein uL13A