IL_8YLR_216

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUA*UC

Length

5 nucleotides

Bulged bases

8YLR|1|A|U|3319

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YLR_216 not in the Motif Atlas

Homologous match to IL_8C3A_136

Geometric discrepancy: 0.2691

The information below is about IL_8C3A_136

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8YLR|1|A|G|3318
8YLR|1|A|U|3319
8YLR|1|A|A|3320
*
8YLR|1|A|U|3387
8YLR|1|A|C|3388

Current chains

Chain A

25S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL3

Chain f

Large ribosomal subunit protein eL31A