IL_8YLR_232

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUAU*AUGGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YLR|1|2|C|1389
8YLR|1|2|U|1390
8YLR|1|2|A|1391
8YLR|1|2|U|1392
*
8YLR|1|2|A|1406
8YLR|1|2|U|1407
8YLR|1|2|G|1408
8YLR|1|2|G|1409
8YLR|1|2|A|1410
8YLR|1|2|A|1411
8YLR|1|2|G|1412

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SB

Small ribosomal subunit protein uS7

Chain SF

Small ribosomal subunit protein uS9A

Chain SG

Small ribosomal subunit protein eS17A

Chain SL

Small ribosomal subunit protein eS28A

Chain SO

Small ribosomal subunit protein RACK1