IL_8YLR_236
3D structure
- PDB id
- 8YLR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AUGAAGC*GGGU
- Length
- 11 nucleotides
- Bulged bases
- 8YLR|1|A|G|2522, 8YLR|1|A|G|2585, 8YLR|1|A|G|2586
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLR_236 not in the Motif Atlas
- Homologous match to IL_8CRE_106
- Geometric discrepancy: 0.1705
- The information below is about IL_8CRE_106
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_00555.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
8YLR|1|A|A|2520
8YLR|1|A|U|2521
8YLR|1|A|G|2522
8YLR|1|A|A|2523
8YLR|1|A|A|2524
8YLR|1|A|G|2525
8YLR|1|A|C|2526
*
8YLR|1|A|G|2584
8YLR|1|A|G|2585
8YLR|1|A|G|2586
8YLR|1|A|U|2587
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain D
- Large ribosomal subunit protein uL2A
- Chain J
- Large ribosomal subunit protein eL8A
- Chain Z
- Large ribosomal subunit protein uL23
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