IL_8YLR_238

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CG*UUG

Length

5 nucleotides

Bulged bases

8YLR|1|A|U|3382

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YLR_238 not in the Motif Atlas

Homologous match to IL_8P9A_358

Geometric discrepancy: 0.165

The information below is about IL_8P9A_358

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

8YLR|1|A|C|3324
8YLR|1|A|G|3325
*
8YLR|1|A|U|3381
8YLR|1|A|U|3382
8YLR|1|A|G|3383

Current chains

Chain A

25S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL3

Chain f

Large ribosomal subunit protein eL31A