IL_8YOO_012
3D structure
- PDB id
- 8YOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2 Å
Loop
- Sequence
- CUCGUGG*CG
- Length
- 9 nucleotides
- Bulged bases
- 8YOO|1|L5|C|185, 8YOO|1|L5|U|187
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YOO_012 not in the Motif Atlas
- Geometric match to IL_6DTD_003
- Geometric discrepancy: 0.2186
- The information below is about IL_6DTD_003
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_34520.3
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 61
Unit IDs
8YOO|1|L5|C|183
8YOO|1|L5|U|184
8YOO|1|L5|C|185
8YOO|1|L5|G|186
8YOO|1|L5|U|187
8YOO|1|L5|G|188
8YOO|1|L5|G|189
*
8YOO|1|L5|C|252
8YOO|1|L5|G|253
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LL
- 60S ribosomal protein L13
- Chain LY
- 60S ribosomal protein L26
- Chain Lj
- 60S ribosomal protein L37
Coloring options: