IL_8YOO_023

3D structure

PDB id

8YOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

AUUCAAC*GCGCAUUU

Length

15 nucleotides

Bulged bases

8YOO|1|L5|U|467, 8YOO|1|L5|U|687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YOO|1|L5|A|466
8YOO|1|L5|U|467
8YOO|1|L5|U|468
8YOO|1|L5|C|469
8YOO|1|L5|A|470
8YOO|1|L5|A|471
8YOO|1|L5|C|472
*
8YOO|1|L5|G|682
8YOO|1|L5|C|683
8YOO|1|L5|G|684
8YOO|1|L5|C|685
8YOO|1|L5|A|686
8YOO|1|L5|U|687
8YOO|1|L5|U|688
8YOO|1|L5|U|689

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain Lr

60S ribosomal protein L28