IL_8YOO_044

3D structure

PDB id

8YOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CUC*GCCCG

Length

8 nucleotides

Bulged bases

8YOO|1|L5|C|1214, 8YOO|1|L5|C|1215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YOO_044 not in the Motif Atlas

Geometric match to IL_4KTG_005

Geometric discrepancy: 0.3995

The information below is about IL_4KTG_005

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

8YOO|1|L5|C|1082
8YOO|1|L5|U|1083
8YOO|1|L5|C|1084
*
8YOO|1|L5|G|1213
8YOO|1|L5|C|1214
8YOO|1|L5|C|1215
8YOO|1|L5|C|1216
8YOO|1|L5|G|1217

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LF

60S ribosomal protein L7

Chain Lb

60S ribosomal protein L29