IL_8YOO_054

3D structure

PDB id

8YOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GGAUC*GCGCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YOO_054 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.3096

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8YOO|1|L5|G|1425
8YOO|1|L5|G|1426
8YOO|1|L5|A|1427
8YOO|1|L5|U|1428
8YOO|1|L5|C|1429
*
8YOO|1|L5|G|1455
8YOO|1|L5|C|1456
8YOO|1|L5|G|1457
8YOO|1|L5|C|1458
8YOO|1|L5|A|1459
8YOO|1|L5|C|1460

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LQ

60S ribosomal protein L18

Chain Lb

60S ribosomal protein L29