IL_8YOO_069

3D structure

PDB id

8YOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CUCGCAGACCCGACGCGCCACG*CG

Length

24 nucleotides

Bulged bases

8YOO|1|L5|C|1717, 8YOO|1|L5|C|1718

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YOO|1|L5|C|1694
8YOO|1|L5|U|1695
8YOO|1|L5|C|1696
8YOO|1|L5|G|1697
8YOO|1|L5|C|1698
8YOO|1|L5|A|1699
8YOO|1|L5|G|1700
8YOO|1|L5|A|1701
8YOO|1|L5|C|1702
8YOO|1|L5|C|1703
8YOO|1|L5|C|1704
8YOO|1|L5|G|1705
8YOO|1|L5|A|1706
8YOO|1|L5|C|1707
8YOO|1|L5|G|1708
8YOO|1|L5|C|1715
8YOO|1|L5|G|1716
8YOO|1|L5|C|1717
8YOO|1|L5|C|1718
8YOO|1|L5|A|1719
8YOO|1|L5|C|1720
8YOO|1|L5|G|1721
*
8YOO|1|L5|C|1841
8YOO|1|L5|G|1842

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LF

60S ribosomal protein L7

Chain LQ

60S ribosomal protein L18

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29