IL_8YOO_074

3D structure

PDB id

8YOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GAUUA*UUCUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YOO_074 not in the Motif Atlas

Homologous match to IL_8C3A_044

Geometric discrepancy: 0.0727

The information below is about IL_8C3A_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

8YOO|1|L5|G|1745
8YOO|1|L5|A|1746
8YOO|1|L5|U|1747
8YOO|1|L5|U|1748
8YOO|1|L5|A|1749
*
8YOO|1|L5|U|1781
8YOO|1|L5|U|1782
8YOO|1|L5|C|1783
8YOO|1|L5|U|1784
8YOO|1|L5|C|1785

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LD

60S ribosomal protein L5

Chain LI

Large ribosomal subunit protein uL16